q213

R-SET NOT_EQUAL

toxicology · mini_dev_sqlite from https://bird-bench.oss-cn-beijing.aliyuncs.com/minidev.zip (sha256 cc48ba16838204e4e214512030cb572eeb5f7bcdd999bae4b9b6ff12ec13b92f, downloaded 2026-09-07), member minidev/MINIDEV/mini_dev_sqlite.json

The question

What type of bond is there between the atoms TR004_8 and TR004_20?

the hint the set supplies: type of bond refers to bond_type; between the atoms TR004_8 and TR004_20 refers to atom_id = 'TR004_8' AND atom_id2 = 'TR004_20' OR another way around

NOT_EQUAL states that these two statements disagree on this data under this rule. It does not state which of them is wrong.

The statements

gold

SELECT T1.bond_type FROM bond AS T1 INNER JOIN connected AS T2 ON T1.bond_id = T2.bond_id WHERE T2.atom_id = 'TR004_8' AND T2.atom_id2 = 'TR004_20' OR T2.atom_id2 = 'TR004_8' AND T2.atom_id = 'TR004_20'

this statement states no ordering of its own

sha256:6494225cf2e36d1309907c24ded48b317f07b6777128c8cfda23303c76876a2f

second

SELECT bond_type FROM bond WHERE molecule_id = (SELECT molecule_id FROM connected WHERE atom_id = 'TR004_8' AND atom_id2 = 'TR004_20') AND bond_id IN (SELECT bond_id FROM connected WHERE atom_id = 'TR004_8' AND atom_id2 = 'TR004_20');

this statement states no ordering of its own

sha256:7f7236114242692825e6f800a3f4f05ed41ded9da4e30bfd110072c515a0f7a1

The marked tokens are where the two texts differ. Two statements that differ everywhere can return the same rows, and two that differ in one token can return other rows; the verdict above is read off the results.

The rows they differ in

in gold, not in the prediction, 1 row

from counterexample.json, 1 row, up to 25 shown per side

side bond_typeTEXT
gold -

in the prediction, not in gold, 0 rows

from counterexample.json, 0 rows, up to 25 shown per side

side bond_typeTEXT
no rows

What the benchmark would have said

BIRD's own check: 1

set(second_rows) == set(gold_rows), REAL cells as Python float as sqlite3 returns them, so Python equality holds 1 == 1.0 == True as the benchmark's own scorer does

https://github.com/bird-bench/mini_dev/blob/main/evaluation/evaluation_ex.py

gold_rows
2
second_rows
1
gold_distinct_rows
1
second_distinct_rows
1

the test-suite check: 0

result_eq: equal row counts and equal column counts, each row unordered as a quick rejection, then the two equal as a list when the gold text holds ORDER BY and as a multiset otherwise, under some permutation of the columns; DISTINCT is not stripped and re-executed, and the cells are SQLite's as sqlite3 returns them

ruiqi-zhong/test-suite-sql-eval, exec_eval.py, result_eq, at commit 48cb78ec: https://github.com/ruiqi-zhong/test-suite-sql-eval/blob/48cb78ecf7f610620206283846c76751b18a1326/exec_eval.py

order_matters
false
gold_rows
2
second_rows
1
gold_columns
1
second_columns
1

the class: multiplicity

The class states what makes these two results unequal under this rule, read off the two results and nothing else. It does not state which of the two statements is wrong.

how many rows each result holds, and how many rows both hold, from evidence-gold.json and evidence-second.json2 gold1 prediction1 rows both results hold
The gold returned 2 rows and the prediction 1. 1 rows occur in both results at least once.
gold_types
["TEXT"]
second_types
["TEXT"]
multiset_equal
false
set_equal
true
order_equal
false
shorter_result_is_a_prefix
true

The results

gold, 2 rows

from counterexample.json, 2 rows

bond_typeTEXT
-
-
second, 1 row

from counterexample.json, 1 row

bond_typeTEXT
-

The probes

A smell is a mechanical reason to read this gold statement again. It is a heuristic: it does not state that the statement is wrong, and a maintainer decides.

ordering-over-numeric-text not applicable

this statement orders by a text column holding only numbers, and ordering it as a number gives a different answer, so the gold may be sorting 9.5 above 10

the statement states no top level ORDER BY

what it measured
{
  "heuristic": true,
  "reason": "the statement states no top level ORDER BY"
}

arbitrary-cut not applicable

this statement cuts its result at a LIMIT that does not decide which rows come back, so a different but equally correct statement can return other rows and score zero

the statement states no LIMIT

what it measured
{
  "heuristic": true,
  "reason": "the statement states no LIMIT"
}

not-a-function-of-the-data quiet

rerun over the same rows in another physical order this statement gives another answer, so its result depends on how the rows are stored and not only on the data

what it measured
{
  "heuristic": true,
  "rule": "R-SET",
  "baseline_result_hash": "sha256:6494225cf2e36d1309907c24ded48b317f07b6777128c8cfda23303c76876a2f",
  "baseline_result": {
    "columns": [
      {
        "name": "bond_type",
        "declared_type": "TEXT"
      }
    ],
    "row_count": 2,
    "truncated": false,
    "rows_shown": 2,
    "rows": [
      [
        {
          "type": "str",
          "value": "-"
        }
      ],
      [
        {
          "type": "str",
          "value": "-"
        }
      ]
    ],
    "result_hash": "sha256:6494225cf2e36d1309907c24ded48b317f07b6777128c8cfda23303c76876a2f"
  },
  "planner_statistics": {},
  "shuffle": {
    "seed": "1",
    "row_limit": 300000,
    "tables": [
      "bond",
      "connected"
    ],
    "tables_not_shuffled": [],
    "tables_skipped_for_size": {},
    "tables_not_reached_by_a_copy": {}
  },
  "shuffled_copies": {
    "run": true,
    "verdict": "equal",
    "differs": false,
    "result_hash": "sha256:6494225cf2e36d1309907c24ded48b317f07b6777128c8cfda23303c76876a2f",
    "result": {
      "columns": [
        {
          "name": "bond_type",
          "declared_type": "TEXT"
        }
      ],
      "row_count": 2,
      "truncated": false,
      "rows_shown": 2,
      "rows": [
        [
          {
            "type": "str",
            "value": "-"
          }
        ],
        [
          {
            "type": "str",
            "value": "-"
          }
        ]
      ],
      "result_hash": "sha256:6494225cf2e36d1309907c24ded48b317f07b6777128c8cfda23303c76876a2f"
    }
  },
  "plan_variant": {
    "run": false,
    "reason": "the plan variant was not asked for"
  }
}

The evidence records

gold: evidence-gold.json

SELECT T1.bond_type FROM bond AS T1 INNER JOIN connected AS T2 ON T1.bond_id = T2.bond_id WHERE T2.atom_id = 'TR004_8' AND T2.atom_id2 = 'TR004_20' OR T2.atom_id2 = 'TR004_8' AND T2.atom_id = 'TR004_20'
statement read from
data/questions/mini_dev_sqlite.json
digest
sha256:4ba5fa8de55856222f484d380d2ba872b380bf79d825de70478e2120cb0fc43b
origin
https://bird-bench.oss-cn-beijing.aliyuncs.com/minidev.zip (sha256 cc48ba16838204e4e214512030cb572eeb5f7bcdd999bae4b9b6ff12ec13b92f, downloaded 2026-09-07), member minidev/MINIDEV/mini_dev_sqlite.json, 2024-06-19

result_hash sha256:6494225cf2e36d1309907c24ded48b317f07b6777128c8cfda23303c76876a2f recomputed from this JSON: match

record_hash sha256:f128109a02e8fc7ed74969a3cba01efa05c4b54965893ad564142f2369d2b0f5 recomputed from this JSON: match

the result this record holds, 2 rows

from evidence-gold.json, 2 rows

bond_typeTEXT
-
-
what ran, and where
run
audit-0ffdadee-5674-483e-9046-75f1f64a26ae
executed at
2026-09-08T05:05:38.350792+00:00
data as of
2026-09-08T05:05:37.844464+00:00
backend at checkout
SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784
backend that answered
SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784
database role
file
replay rule
R-SET
question set version
sha256:4ba5fa8de55856222f484d380d2ba872b380bf79d825de70478e2120cb0fc43b
validator
audit:sqlglot-sqlite-parse
checks run
parses_as_exactly_one_statement, the_one_statement_is_a_select, no_placeholder_without_a_bound_parameter
statement timeout
30000 ms
rows
2 rows
the session it ran under
engine
sqlite
time_zone
not stated by this engine
date_style
not stated by this engine
interval_style
not stated by this engine
extra_float_digits
not stated by this engine
database_collation
not stated by this engine
work_mem
not stated by this engine
hash_mem_multiplier
not stated by this engine

recorded beside them

sqlite_version
3.53.4
encoding
UTF-8
reverse_unordered_selects
0
query_only
1
journal_mode
delete
data_version
1
compile_options
ATOMIC_INTRINSICS=1,COMPILER=clang-21.0.0,DEFAULT_AUTOVACUUM,DEFAULT_CACHE_SIZE=-2000,DEFAULT_FILE_FORMAT=4,DEFAULT_JOURNAL_SIZE_LIMIT=-1,DEFAULT_MMAP_SIZE=0,DEFAULT_PAGE_SIZE=4096,DEFAULT_PCACHE_INITSZ=20,DEFAULT_RECURSIVE_TRIGGERS,DEFAULT_SECTOR_SIZE=4096,DEFAULT_SYNCHRONOUS=2,DEFAULT_WAL_AUTOCHECKPOINT=1000,DEFAULT_WAL_SYNCHRONOUS=2,DEFAULT_WORKER_THREADS=0,DIRECT_OVERFLOW_READ,ENABLE_API_ARMOR,ENABLE_COLUMN_METADATA,ENABLE_DBSTAT_VTAB,ENABLE_FTS3,ENABLE_FTS3_PARENTHESIS,ENABLE_FTS5,ENABLE_GEOPOLY,ENABLE_MATH_FUNCTIONS,ENABLE_MEMORY_MANAGEMENT,ENABLE_PERCENTILE,ENABLE_PREUPDATE_HOOK,ENABLE_RTREE,ENABLE_SESSION,ENABLE_STAT4,ENABLE_UNLOCK_NOTIFY,MALLOC_SOFT_LIMIT=1024,MAX_ATTACHED=10,MAX_COLUMN=2000,MAX_COMPOUND_SELECT=500,MAX_DEFAULT_PAGE_SIZE=8192,MAX_EXPR_DEPTH=1000,MAX_FUNCTION_ARG=1000,MAX_LENGTH=1000000000,MAX_LIKE_PATTERN_LENGTH=50000,MAX_MMAP_SIZE=0x7fff0000,MAX_PAGE_COUNT=0xfffffffe,MAX_PAGE_SIZE=65536,MAX_SQL_LENGTH=1000000000,MAX_TRIGGER_DEPTH=1000,MAX_VARIABLE_NUMBER=250000,MAX_VDBE_OP=250000000,MAX_WORKER_THREADS=8,MUTEX_PTHREADS,SYSTEM_MALLOC,TEMP_STORE=1,THREADSAFE=1,USE_URI
collation_list
RTRIM,NOCASE,BINARY
case_sensitive_like
0
the rendering and the data
version
attestql/audit/2
numeric_scale
6
timestamp_format
%Y-%m-%dT%H:%M:%S.%fZ
timezone
UTC
null_rendering
NULL
encoding
utf-8
schema digest
sha256:57215530d3268ac7c6c8f02d63132dc7c83a816802cd60046648ecf89d1e66a0
source file sha256
sha256:35ef27ae6bdfda530e125ed369666ac0abb8bc8c0bcc0ad09407f547ecb61a93
rows in main.bond
9156
rows in main.connected
18312

second: evidence-second.json

SELECT bond_type FROM bond WHERE molecule_id = (SELECT molecule_id FROM connected WHERE atom_id = 'TR004_8' AND atom_id2 = 'TR004_20') AND bond_id IN (SELECT bond_id FROM connected WHERE atom_id = 'TR004_8' AND atom_id2 = 'TR004_20');
statement read from
data/preds-sqlite/predict_mini_dev_phi-3-medium-128k-instruct-1_sqlite.json
digest
sha256:5e1a3a37cb174cbe62ff3bd269b293b6473c99da34f3fe3ac6f186dd5a1a7ff5
origin
https://raw.githubusercontent.com/bird-bench/mini_dev/b3d4bcbbae9a96934ad812551eb400c7a3b23c12/llm/exp_result/sql_output_kg/predict_mini_dev_phi-3-medium-128k-instruct-1_sqlite.json, 2024-06-19

result_hash sha256:7f7236114242692825e6f800a3f4f05ed41ded9da4e30bfd110072c515a0f7a1 recomputed from this JSON: match

record_hash sha256:b2e00e75d6c37769ed9f733fa14aa462df6774a3b7666397170d1c9677211809 recomputed from this JSON: match

the result this record holds, 1 row

from evidence-second.json, 1 row

bond_typeTEXT
-
what ran, and where
run
audit-0ffdadee-5674-483e-9046-75f1f64a26ae
executed at
2026-09-08T05:05:38.350984+00:00
data as of
2026-09-08T05:05:37.844464+00:00
backend at checkout
SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784
backend that answered
SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784
database role
file
replay rule
R-SET
question set version
sha256:4ba5fa8de55856222f484d380d2ba872b380bf79d825de70478e2120cb0fc43b
validator
audit:sqlglot-sqlite-parse
checks run
parses_as_exactly_one_statement, the_one_statement_is_a_select, no_placeholder_without_a_bound_parameter
statement timeout
30000 ms
rows
1 row
the session it ran under
engine
sqlite
time_zone
not stated by this engine
date_style
not stated by this engine
interval_style
not stated by this engine
extra_float_digits
not stated by this engine
database_collation
not stated by this engine
work_mem
not stated by this engine
hash_mem_multiplier
not stated by this engine

recorded beside them

sqlite_version
3.53.4
encoding
UTF-8
reverse_unordered_selects
0
query_only
1
journal_mode
delete
data_version
1
compile_options
ATOMIC_INTRINSICS=1,COMPILER=clang-21.0.0,DEFAULT_AUTOVACUUM,DEFAULT_CACHE_SIZE=-2000,DEFAULT_FILE_FORMAT=4,DEFAULT_JOURNAL_SIZE_LIMIT=-1,DEFAULT_MMAP_SIZE=0,DEFAULT_PAGE_SIZE=4096,DEFAULT_PCACHE_INITSZ=20,DEFAULT_RECURSIVE_TRIGGERS,DEFAULT_SECTOR_SIZE=4096,DEFAULT_SYNCHRONOUS=2,DEFAULT_WAL_AUTOCHECKPOINT=1000,DEFAULT_WAL_SYNCHRONOUS=2,DEFAULT_WORKER_THREADS=0,DIRECT_OVERFLOW_READ,ENABLE_API_ARMOR,ENABLE_COLUMN_METADATA,ENABLE_DBSTAT_VTAB,ENABLE_FTS3,ENABLE_FTS3_PARENTHESIS,ENABLE_FTS5,ENABLE_GEOPOLY,ENABLE_MATH_FUNCTIONS,ENABLE_MEMORY_MANAGEMENT,ENABLE_PERCENTILE,ENABLE_PREUPDATE_HOOK,ENABLE_RTREE,ENABLE_SESSION,ENABLE_STAT4,ENABLE_UNLOCK_NOTIFY,MALLOC_SOFT_LIMIT=1024,MAX_ATTACHED=10,MAX_COLUMN=2000,MAX_COMPOUND_SELECT=500,MAX_DEFAULT_PAGE_SIZE=8192,MAX_EXPR_DEPTH=1000,MAX_FUNCTION_ARG=1000,MAX_LENGTH=1000000000,MAX_LIKE_PATTERN_LENGTH=50000,MAX_MMAP_SIZE=0x7fff0000,MAX_PAGE_COUNT=0xfffffffe,MAX_PAGE_SIZE=65536,MAX_SQL_LENGTH=1000000000,MAX_TRIGGER_DEPTH=1000,MAX_VARIABLE_NUMBER=250000,MAX_VDBE_OP=250000000,MAX_WORKER_THREADS=8,MUTEX_PTHREADS,SYSTEM_MALLOC,TEMP_STORE=1,THREADSAFE=1,USE_URI
collation_list
RTRIM,NOCASE,BINARY
case_sensitive_like
0
the rendering and the data
version
attestql/audit/2
numeric_scale
6
timestamp_format
%Y-%m-%dT%H:%M:%S.%fZ
timezone
UTC
null_rendering
NULL
encoding
utf-8
schema digest
sha256:57215530d3268ac7c6c8f02d63132dc7c83a816802cd60046648ecf89d1e66a0
source file sha256
sha256:35ef27ae6bdfda530e125ed369666ac0abb8bc8c0bcc0ad09407f547ecb61a93
rows in main.bond
9156
rows in main.connected
18312

Running these again

gold

re-run this statement read-only against SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784 under the session settings and over the data this record's fixture digest names, and compare the two results under R-SET

second

re-run this statement read-only against SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784 under the session settings and over the data this record's fixture digest names, and compare the two results under R-SET

This question's run

run
audit-0ffdadee-5674-483e-9046-75f1f64a26ae
server
SQLite 3.53.4 | file=/private/tmp/attestql-runs/data/minidev/dev_databases/toxicology/toxicology.sqlite | size=2678784
question set
mini_dev_sqlite from https://bird-bench.oss-cn-beijing.aliyuncs.com/minidev.zip (sha256 cc48ba16838204e4e214512030cb572eeb5f7bcdd999bae4b9b6ff12ec13b92f, downloaded 2026-09-07), member minidev/MINIDEV/mini_dev_sqlite.json
replay rule
R-SET

the run this question belongs to

The JSON this page was rendered from